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outFile : the SAM/BAM file to be written
outFile : the SAM/BAM file to be written
num-bases-to-trim-on-each-side : the number of bases/qualities to trim from each side
num-bases-to-trim-on-each-side : the number of bases/qualities to trim from each side
Instead of num-bases-to-trim-on-each-side, -L/-R can be specified to indicate the number of bases to trim from the left/right
Instead of num-bases-to-trim-on-each-side, -L/-R (or --left/--right) can be specified to indicate the number of bases to trim from the left/right
Optional Parameters:
Optional Parameters:
--reverse : reverse the left/right for reverse reads
--reverse : reverse the left/right for reverse reads
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= Return Value =
= Return Value =
