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=== Ignore the Strand when Trimming (<code>--ignoreStrand</code> or <code>-i</code>) ===
=== Ignore the Strand when Trimming (<code>--ignoreStrand</code> or <code>-i</code>) ===
Use <code>--ignoreStrand</code> or <code>--i</code> to ignore the strand information and treat forward/reverese the same. When <code>--ignoreStrand</code> or <code>--i</code> is set, do not reverse reverse reads prior to trimming left/right.
Use <code>--ignoreStrand</code> or <code>-i</code> to ignore the strand information and treat forward/reverse the same. When <code>--ignoreStrand</code> or <code>-i</code> is set, do not reverse reverse reads prior to trimming left/right.
=== SoftClip the Ends (<code>--clip</code> or <code>-c</code>) ===
=== SoftClip the Ends (<code>--clip</code> or <code>-c</code>) ===
