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, 15:51, 25 October 2016
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| ** Note: In the VCF file either PL or GL has to be provided, and only the PL (or GL) field is used in the calling. | | ** Note: In the VCF file either PL or GL has to be provided, and only the PL (or GL) field is used in the calling. |
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− | * A map file in the PLINK format. See blow for examples how to generate a high quality map file. | + | * A map file in the PLINK format. See blow for examples how to generate a map file with common and high quality variants |
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| == Examples of generating the map file == | | == Examples of generating the map file == |