Changes

** Note: In the VCF file either PL or GL has to be provided, and only the PL (or GL) field is used in the calling.

** Note: In the VCF file either PL or GL has to be provided, and only the PL (or GL) field is used in the calling.

* A map file in the PLINK format. See blow for examples how to generate a high quality map file.

* A map file in the PLINK format. See blow for examples how to generate a map file with common and high quality variants

== Examples of generating the map file ==

== Examples of generating the map file ==