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Revision as of 10:16, 10 December 2017
, 10:16, 10 December 2017→Problem Sets
[[Biostatistics 666: Introduction to the Coalescent]] - [[Media:666.04 - The Coalescent.pdf|PDF]]
[[Biostatistics 666: Introduction to the Coalescent]] - [[Media:666.04 - The Coalescent.pdf|PDF]]
[[Biostatistics 666: Modeling Variation in the Coalescent]] - [[Media:666.2017.05_-_Coalescent_and_Allele_Counts.pdf|PDF]]
[[Biostatistics 666: Modeling Recombination and Migration in the Coalescent]] - [[Media:666.2017.06_-_More_Advanced_Coalescent_Models.pdf|PDF]]
[[Biostatistics 666: Maximum Likelihood Allele Frequency Estimation]] - [[Media:666.2017.07 - Maximum Likelihood Estimation.pdf|PDF]]
[[Biostatistics 666: Introduction to the E-M Algorithm]] - [[Media:666.2017.08 - The E-M Algorithm.pdf|PDF]]
[[Biostatistics 666: Haplotype Estimation]] - [[Media:666.2017.09_-_Haplotype_Estimation.pdf|PDF]]
[[Biostatistics 666: Advanced Haplotype Estimation]] - [[Media:666.2017.10_-_Advanced_Haplotyping.pdf|PDF]]
[[Biostatistics 666: Power of Genomewide Association Studies]] - [[Media:666.2010.01_-_Power_of_Genomewide_Studies.pdf |PDF]]
Biostatistics 666: Kinship Coefficients and Relatedness - [[Media:666.2017.12_-_Kinship_Coefficients.pdf|PDF]]
[[Biostatistics 666: Variance Component Analyses]] - [[Media:666.2017.13_-_Variance_Component_Models.pdf|PDF]]
[[Biostatistics 666: Linkage Analysis in Sibling Pairs]] - [[Media:666.2017.14_-_Affected_Sibling_Pairs.pdf|PDF]]
[[Biostatistics 666: Modeling Variation in the Coalescent]] - [[Media:666.05.pdf|PDF]]
[[Biostatistics 666: Genotype Imputation]] - [[Media:666.2017.15_-_Genotype_Imputation.pdf|PDF]]
[[Biostatistics 666: Modeling Recombination and Migration in the Coalescent]] - [[Media:666.06.pdf|PDF]]
[[Biostatistics 666: Whole Genome Sequencing]] - [[Media:666.2017.16_-_Introduction_to_Sequencing.pdf|PDF]]
[[Biostatistics 666: Maximum Likelihood Allele Frequency Estimation]] - [[Media:666.09.pdf|PDF]]
[[Biostatistics 666: Functional Genomics (Guest lecture)]] - [[Media:Biostat666FunctionalGenomics_v4(2017).pdf|PDF]]
[[Biostatistics 666: Introduction to the E-M Algorithm]] - [[Media:666.10.pdf|PDF]]
[[Biostatistics 666: Introduction to De Novo Assembly]] - [[Media:666.2012.01_-_De_Novo_Assembly.pdf|PDF]]
Lectures below have not yet been updated for 2017.
[[Biostatistics 666: Haplotype Association Tests]] - [[Media:666.12.pdf|PDF]]
[[Biostatistics 666: Haplotype Association Tests]] - [[Media:666.12.pdf|PDF]]
[[Biostatistics 666: Association Tests in Structured Populations]] - [[Media:666.13.pdf|PDF]]
[[Biostatistics 666: Association Tests in Structured Populations]] - [[Media:666.13.pdf|PDF]]
[[Biostatistics 666: Multipoint Analysis in Sibling Pairs]] - [[Media:666.16.pdf|PDF]]
[[Biostatistics 666: Multipoint Analysis in Sibling Pairs]] - [[Media:666.16.pdf|PDF]]
[[Biostatistics 666: Relationship Checking]] - [[Media:666.17.pdf|PDF]]
[[Biostatistics 666: Relationship Checking]] - [[Media:666.17.pdf|PDF]]
[[Biostatistics 666: Analysis of Low Pass Sequence Data]] - [[Media:666.2010.05.pdf|PDF]]
[[Biostatistics 666: Analysis of Low Pass Sequence Data]] - [[Media:666.2010.05.pdf|PDF]]
[[Biostatistics 666: Analysis of Copy Number Using Sequence Data]] - [[Media:666.2011.02.pdf|PDF]]
[[Biostatistics 666: Analysis of Copy Number Using Sequence Data]] - [[Media:666.2011.02.pdf|PDF]]
[[Biostatistics 666: Rare Variant Burden Tests]] - [[Media:666.2011.01.pdf|PDF]]
[[Biostatistics 666: Rare Variant Burden Tests]] - [[Media:666.2011.01.pdf|PDF]]
[[Biostatistics 666: Likelihood Calculations for Large Pedigrees]] - [[Media:666.24.pdf|PDF]]
[[Biostatistics 666: Likelihood Calculations for Large Pedigrees]] - [[Media:666.24.pdf|PDF]]
== Problem Sets ==
== Problem Sets ==
[[Media:666.Worksheet 1.pdf|Problem Set 1]]
[[Media:666.Worksheet 1.pdf|Problem Set 1]] -- [[Media:666.Worksheet_1.Solution.pdf|Solution]]
[[Media:666.Worksheet_2.pdf|Problem Set 2]] -- [[Media:666.Worksheet_2.Solution.pdf|Solution]]
[[Media:666.Worksheet_3.pdf|Problem Set 3]] -- [[Media:666.Worksheet_3.Solution.pdf|Solution]]
[[Media:666.Worksheet_4.pdf|Problem Set 4]] -- [[Media:666.Worksheet_4.Solution.pdf|Solution]]
[[Media:666.Worksheet_5.pdf|Problem Set 5]] -- [[Media:666.Worksheet_5.Solution.pdf|Solution]]
== Sample Mid-Term ==
[[Media:666.SampleMidterm.pdf|Sample Mid-Term]]
[[Media:666.SampleMidterm02.pdf|2nd Sample Mid-Term]]
== Office Hours ==
== Office Hours ==
* 2011/2012
* 2011/2012
* 2012/2013
* 2012/2013
* 2017/2018
He last taught it in the 2012/2013 academic year. For previous course notes, see [[http://www.sph.umich.edu/csg/abecasis/class Goncalo's older class notes]].
He last taught it in the 2017/2018 academic year. For previous course notes, see [[http://csg.sph.umich.edu/abecasis/class Goncalo's older class notes]].
