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| [[Biostatistics 666: Introduction to the E-M Algorithm]] - [[Media:666.2017.08 - The E-M Algorithm.pdf|PDF]] | | [[Biostatistics 666: Introduction to the E-M Algorithm]] - [[Media:666.2017.08 - The E-M Algorithm.pdf|PDF]] |
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| + | [[Biostatistics 666: Haplotype Estimation]] - [[Media:666.2017.09_-_Haplotype_Estimation.pdf|PDF]] |
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| + | [[Biostatistics 666: Advanced Haplotype Estimation]] - [[Media:666.2017.10_-_Advanced_Haplotyping.pdf|PDF]] |
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| + | [[Biostatistics 666: Power of Genomewide Association Studies]] - [[Media:666.2010.01_-_Power_of_Genomewide_Studies.pdf |PDF]] |
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| + | Biostatistics 666: Kinship Coefficients and Relatedness - [[Media:666.2017.12_-_Kinship_Coefficients.pdf|PDF]] |
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| + | [[Biostatistics 666: Variance Component Analyses]] - [[Media:666.2017.13_-_Variance_Component_Models.pdf|PDF]] |
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| + | [[Biostatistics 666: Linkage Analysis in Sibling Pairs]] - [[Media:666.2017.14_-_Affected_Sibling_Pairs.pdf|PDF]] |
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| + | [[Biostatistics 666: Genotype Imputation]] - [[Media:666.2017.15_-_Genotype_Imputation.pdf|PDF]] |
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| + | [[Biostatistics 666: Whole Genome Sequencing]] - [[Media:666.2017.16_-_Introduction_to_Sequencing.pdf|PDF]] |
| + | |
| + | [[Biostatistics 666: Functional Genomics (Guest lecture)]] - [[Media:Biostat666FunctionalGenomics_v4(2017).pdf|PDF]] |
| + | |
| + | [[Biostatistics 666: Introduction to De Novo Assembly]] - [[Media:666.2012.01_-_De_Novo_Assembly.pdf|PDF]] |
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| Lectures below have not yet been updated for 2017. | | Lectures below have not yet been updated for 2017. |
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− | [[Biostatistics 666: Haplotype Estimation]] - [[Media:666.11.pdf|PDF]]
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| [[Biostatistics 666: Haplotype Association Tests]] - [[Media:666.12.pdf|PDF]] | | [[Biostatistics 666: Haplotype Association Tests]] - [[Media:666.12.pdf|PDF]] |
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| [[Biostatistics 666: Association Tests in Structured Populations]] - [[Media:666.13.pdf|PDF]] | | [[Biostatistics 666: Association Tests in Structured Populations]] - [[Media:666.13.pdf|PDF]] |
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− | [[Biostatistics 666: Power of Genomewide Association Studies]] - [[Media:666.2010.01.pdf|PDF]]
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− | [[Biostatistics 666: Linkage Analysis in Sibling Pairs]] - [[Media:666.2010.02.pdf|PDF]]
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| [[Biostatistics 666: Multipoint Analysis in Sibling Pairs]] - [[Media:666.16.pdf|PDF]] | | [[Biostatistics 666: Multipoint Analysis in Sibling Pairs]] - [[Media:666.16.pdf|PDF]] |
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| [[Biostatistics 666: Relationship Checking]] - [[Media:666.17.pdf|PDF]] | | [[Biostatistics 666: Relationship Checking]] - [[Media:666.17.pdf|PDF]] |
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− | [[Biostatistics 666: Genotype Imputation]] - [[Media:666.2010.03.pdf|PDF]]
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− | [[Biostatistics 666: Whole Genome Sequencing]] - [[Media:666.2010.04.pdf|PDF]]
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| [[Biostatistics 666: Analysis of Low Pass Sequence Data]] - [[Media:666.2010.05.pdf|PDF]] | | [[Biostatistics 666: Analysis of Low Pass Sequence Data]] - [[Media:666.2010.05.pdf|PDF]] |
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| [[Biostatistics 666: Analysis of Copy Number Using Sequence Data]] - [[Media:666.2011.02.pdf|PDF]] | | [[Biostatistics 666: Analysis of Copy Number Using Sequence Data]] - [[Media:666.2011.02.pdf|PDF]] |
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− | [[Biostatistics 666: Introduction to De Novo Assembly]] - [[Media:666.2012.01.pdf|PDF]]
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| [[Biostatistics 666: Rare Variant Burden Tests]] - [[Media:666.2011.01.pdf|PDF]] | | [[Biostatistics 666: Rare Variant Burden Tests]] - [[Media:666.2011.01.pdf|PDF]] |
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− | [[Biostatistics 666: Variance Component Analyses]] - [[Media:666.20.pdf|PDF]]
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| [[Biostatistics 666: Likelihood Calculations for Large Pedigrees]] - [[Media:666.24.pdf|PDF]] | | [[Biostatistics 666: Likelihood Calculations for Large Pedigrees]] - [[Media:666.24.pdf|PDF]] |
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| == Problem Sets == | | == Problem Sets == |
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− | [[Media:666.Worksheet 1.pdf|Problem Set 1]] | + | [[Media:666.Worksheet 1.pdf|Problem Set 1]] -- [[Media:666.Worksheet_1.Solution.pdf|Solution]] |
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− | [[Media:666.Worksheet_2.pdf|Problem Set 2]] | + | [[Media:666.Worksheet_2.pdf|Problem Set 2]] -- [[Media:666.Worksheet_2.Solution.pdf|Solution]] |
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| + | [[Media:666.Worksheet_3.pdf|Problem Set 3]] -- [[Media:666.Worksheet_3.Solution.pdf|Solution]] |
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| + | [[Media:666.Worksheet_4.pdf|Problem Set 4]] -- [[Media:666.Worksheet_4.Solution.pdf|Solution]] |
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| + | [[Media:666.Worksheet_5.pdf|Problem Set 5]] -- [[Media:666.Worksheet_5.Solution.pdf|Solution]] |
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| == Sample Mid-Term == | | == Sample Mid-Term == |
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| [[Media:666.SampleMidterm.pdf|Sample Mid-Term]] | | [[Media:666.SampleMidterm.pdf|Sample Mid-Term]] |
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| + | [[Media:666.SampleMidterm02.pdf|2nd Sample Mid-Term]] |
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| == Office Hours == | | == Office Hours == |
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| * 2011/2012 | | * 2011/2012 |
| * 2012/2013 | | * 2012/2013 |
| + | * 2017/2018 |
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− | He last taught it in the 2012/2013 academic year. For previous course notes, see [[http://www.sph.umich.edu/csg/abecasis/class Goncalo's older class notes]]. | + | He last taught it in the 2017/2018 academic year. For previous course notes, see [[http://csg.sph.umich.edu/abecasis/class Goncalo's older class notes]]. |