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Revision as of 13:53, 28 October 2013
, 13:53, 28 October 2013→Code Snippets
[[830 - MarkovModel::CountErrorsAndRecombinants()]]
[[830 - MarkovModel::CountErrorsAndRecombinants()]]
[[830 - MINIMAC::main()]]
== Li et al (2013) Genome Research ==
=== Full Citation ===
Li H, Ruan J, Durbin R (2008) Mapping short DNA sequencing reads and calling variants using mapping quality scores. ''Genome Res.'' '''18''':1851-8.
=== Code Snippets ===
[[830 - BasicMapper::main()]]
[[830 - MaqIndex::GetWord()]]
[[830 - MaqIndex::BuildIndex()]]
[[830 - MaqIndex::LookupWord()]]
[[830 - MaqIndex::CompareToIndex()]]
[[830 - BestAlignment::MaqAlignment()]]
[[830 - BestAlignment::EvaluateAlignment() (main loop)]]
[[830 - BestAlignment::EvaluateAlignment() (detailed comparison)]]
[[830 - BestAlignment::isNewPosition()]]
[[830 - BestAlignment::IterateCache()]]
[[830 - BestAlignment::ClearPositions()]]
