1,555
edits
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Revision as of 20:01, 29 November 2016
, 20:01, 29 November 2016→Planned Reading
* Iqbal Z, Caccamo M, Turner I, Flicek P, McVean G (2012) De novo assembly and genotyping of variants using colored de Bruijn graphs. ''Nat Genet.'' '''44''':226-32. PMID: 22231483
* Iqbal Z, Caccamo M, Turner I, Flicek P, McVean G (2012) De novo assembly and genotyping of variants using colored de Bruijn graphs. ''Nat Genet.'' '''44''':226-32. PMID: 22231483
* Jun G, Flickinger M, Hetrick KN, Romm JM, Doheny KF, Abecasis GR, Boehnke M, Kang HM (2012) Detecting and estimating contamination of human DNA samples in sequencing and array-based genotype data. ''Am J Hum Genet.'' '''91''':839-48. PMID: 23103226
* Kang HM, Sul JH, Service SK, Zaitlen NA, Kong SY, Freimer NB, Sabatti C, Eskin E (2010) Variance component model to account for sample structure in genome-wide association studies. ''Nat. Genet.'' '''42''':348-354
* Kang HM, Sul JH, Service SK, Zaitlen NA, Kong SY, Freimer NB, Sabatti C, Eskin E (2010) Variance component model to account for sample structure in genome-wide association studies. ''Nat. Genet.'' '''42''':348-354
* Li H, Durbin R (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. ''Bioinformatics.'' '''25''':1754-60. PMID: 19451168
* Li H, Durbin R (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. ''Bioinformatics.'' '''25''':1754-60. PMID: 19451168
* Li H, Durbin R (2011) Inference of human population history from individual whole-genome sequences. ''Nature.'' '''475''':493-6. PMID: 21753753
* Li Y, Willer CJ, Ding J, Scheet P, Abecasis GR (2010) MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes. ''Genet Epidemiol.'' '''34''':816-34. PMID: 21058334 [[Biostatistics 830 - Code Snippets|[Code Snippets]]]
* Li Y, Willer CJ, Ding J, Scheet P, Abecasis GR (2010) MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes. ''Genet Epidemiol.'' '''34''':816-34. PMID: 21058334 [[Biostatistics 830 - Code Snippets|[Code Snippets]]]
* Wen X, Stephens M (2010) Using linear predictors to impute allele frequencies from summary or pooled genotype data. ''Ann Appl Stat.'' '''4''':1158-1182. PMID: 21479081
* Wen X, Stephens M (2010) Using linear predictors to impute allele frequencies from summary or pooled genotype data. ''Ann Appl Stat.'' '''4''':1158-1182. PMID: 21479081
* Wu MC, Lee S, Cai T, Li Y, Boehnke M, Lin X (2011) Rare-variant association testing for sequencing data with the sequence kernel association test. Am J Hum Genet. 89:82-93
* Zerbino DR, Birney E (2008) Velvet: algorithms for de novo short read assembly using de Bruijn graphs. ''Genome Res.'' '''18''':821-9. PMID: 18349386
== Course History ==
== Course History ==
This course is offered occasionally. Typically, Mike Boehnke has taught it. Each instructor gives the course a different flavor, so you may find it worthwhile -- even if you have taken the course with Mike previously.
This course is offered occasionally. Typically, Mike Boehnke has taught it. Each instructor gives the course a different flavor, so you may find it worthwhile -- even if you have taken the course with Mike previously.
