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, 17:19, 23 August 2010
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| NOTE: If the TotalReads is greater than 10^6, then the Read Counts and Base Counts specify the total counts divided by 10^6. This is indicated in the output with a (e6) appended to the field name. | | NOTE: If the TotalReads is greater than 10^6, then the Read Counts and Base Counts specify the total counts divided by 10^6. This is indicated in the output with a (e6) appended to the field name. |
| + | |
| + | ==== Example Statistics Output ==== |
| + | <pre> |
| + | TotalReads(e6) 18.90 |
| + | MappedReads(e6) 14.77 |
| + | PairedReads(e6) 18.90 |
| + | ProperPair(e6) 11.28 |
| + | DuplicateReads(e6) 0.00 |
| + | QCFailureReads(e6) 0.00 |
| + | |
| + | MappingRate(%) 78.17 |
| + | PairedReads(%) 100.00 |
| + | ProperPair(%) 59.68 |
| + | DupRate(%) 0.00 |
| + | QCFailRate(%) 0.00 |
| + | |
| + | TotalBases(e6) 699.30 |
| + | BasesInMappedReads(e6) 546.67 |
| + | </pre> |
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| == Usage Examples == | | == Usage Examples == |
| [[Sam Library Usage Examples]] | | [[Sam Library Usage Examples]] |