3,045
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to searchno edit summary
| <code>void SamRecord::resetRecord()</code>
| <code>void SamRecord::resetRecord()</code>
| Resets the record to be an empty record. This is not necessary when you are reading a Sam/Bam file, but if you are setting fields, it is a good idea to clean out a record before reusing it. Clearing it allows you to not have to set any empty fields.
| Resets the record to be an empty record. This is not necessary when you are reading a Sam/Bam file, but if you are setting fields, it is a good idea to clean out a record before reusing it. Clearing it allows you to not have to set any empty fields.
|-
|-
| <code>bool SamRecord::setReadName(const char* readName)</code>
| <code>bool SamRecord::setReadName(const char* readName)</code>
| <code>const char* SamRecord::getQuality()</code>
| <code>const char* SamRecord::getQuality()</code>
| Returns the SAM formatted Quality string.
| Returns the SAM formatted Quality string.
|-
| <code>uint32_t SamRecord::getTagLength()>/code>
| Returns the length of the tags in BAM format.
|-
|-
| <code>bool SamRecord::getNextSamTag(char* tag, char& vtype, void** value)</code>
| <code>bool SamRecord::getNextSamTag(char* tag, char& vtype, void** value)</code>
| Returns true if a tag was read, false if there are no more tags.
| Returns true if a tag was read, false if there are no more tags.
For a true return value, tag is sent to the tag of the tag, vtype is set to the vtype of the tag, and value is a pointer to the value of the tag. You will then need to use a switch to cast value to int, double, char, or String.
For a true return value, tag is sent to the tag of the tag, vtype is set to the vtype of the tag, and value is a pointer to the value of the tag. You will then need to use a switch to cast value to int, double, char, or String.
|-
| <code>void SamRecord::resetTagIter()</code>
| Resets the iterator that loops through the tags to the beginning of the tags. The iterator is automatically reset when a new record is read. This method is only necessary if you want to iterate over a set of tags multiple times.
|-
|-
| <code>bool SamRecord::isIntegerType(char vtype)</code>
| <code>bool SamRecord::isIntegerType(char vtype)</code>
