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| <code>const char* SamRecord::getQuality()</code>
| <code>const char* SamRecord::getQuality()</code>
| Returns the SAM formatted Quality string.
| Returns the SAM formatted Quality string.
|-
|<code>Cigar* SamRecord::getCigarInfo()</code>
| Returns a pointer to the Cigar object associated with this record. This object is essentially read-only - only allowing modifications due to lazy evaluations.
|-
| <code>uint32_t SamRecord::getNumOverlaps(int32_t start, int32_t end)</code>
| Return the number of bases in this read that overlap the passed in region.
Matches and mismatches between the read and the reference are counted as overlaps, but insertions, deletions, skips, clips, and pads are not counted.
start is the 0-based inclusive starting reference position of the region.
end is the 0-based exclusive ending reference position of the region.
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|-
| <code>bool SamRecord::getFields(bamRecordStruct& recStruct, String& readName, String& cigar, String& sequence, String& quality)</code>
| <code>bool SamRecord::getFields(bamRecordStruct& recStruct, String& readName, String& cigar, String& sequence, String& quality)</code>
