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= libcsg Change Log =
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<div style="font-size:162%; border:none; margin:0; padding:.1em; color:#000;">This change log & the statgen repository have been DEPRECATED
To see changes for the new libStatGen repository, consult the github history:
https://github.com/statgen/libStatGen/commits/master/</div>
|}
= general Change Log =
This page tracks the updates/enhancements that have been updated in the git repository. It is primarily used to track the user interface changes, so users can see what bugs have been fixed, or what new features have been added.
This page tracks the updates/enhancements that have been updated in the git repository. It is primarily used to track the user interface changes, so users can see what bugs have been fixed, or what new features have been added.
== Enhancements/Updates/Fixes ==
== Enhancements/Updates/Fixes ==
=== 11/01/2010 ===
* made part of statgen library
=== 09/29/2010 ===
* Updated CigarRoller to have a method to set a CigarRoller from another CigarRoller.
* Cigar: Add static methods to return whether or not an operation is a clip (isClip) or indicates bases found in the query sequence (foundInQuery).
* Update how to specify stdin file type - now use the ifileCompression parameter to ifopen.
=== 09/24/2010 ===
* Add capability to read/write from/to stdin/stdout
** Updated most cout/stdout to cerr/stderr for info/error messages.
* Added a BaseUtilities Class for determining information about bases & qualities.
=== 09/15/2010 ===
* Fix bug in BgzfFileType. For BGZF - EOF is determined when 0 bytes read, but if 0 were specified to be read, it is not EOF.
=== 08/24/2010 ===
* Paul updated Cigar to have a getCigarString that takes std::string instead of just String.
=== 08/12/2010 ===
* Fix bug in Cigar::getQueryIndex from reference position that did not first check if the query and reference maps were created.
=== 08/11/2010 ===
=== 08/11/2010 ===
* Split CigarRoller into a base class, Cigar, and a child class, CigarRoller.
* Split CigarRoller into a base class, Cigar, and a child class, CigarRoller.
