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Revision as of 12:56, 13 May 2010
, 12:56, 13 May 2010no edit summary
== Enhancements/Updates/Fixes ==
== Enhancements/Updates/Fixes ==
=== 5/13/2010 ===
* Update '''CigarRoller'''
** added handling of operation "N" with enum value skip.
** added getQueryIndex and getRefOffset to map between a query index and reference offset based on the cigar string.
** Renamed getMatchCount to getExpectedQueryBaseCount so the name better described its function.
** Moved the cigarOperations vector to private.
=== 5/3/2010 ===
=== 5/3/2010 ===
* Updated BGZF Files to check for the empty BGZF block at the end when being opened. The open fails if the block is not there unless the static method to not require it is called: BgzfFileType::setRequireEofBlock(false);
* Updated BGZF Files to check for the empty BGZF block at the end when being opened. The open fails if the block is not there unless the static method to not require it is called: BgzfFileType::setRequireEofBlock(false);
