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C++ Library: libStatGen (view source)

Revision as of 15:54, 31 January 2017

430 bytes added ,  15:54, 31 January 2017
→‎Library Documentation
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= Copyrights =
 
= Copyrights =
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'''If you use this software, please e-mail me, Mary Kate Trost, at mktrost@umich.edu'''
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'''If you use this software, please e-mail me, Mary Kate Wing, at mktrost@umich.edu'''
    
Here are links to the copyrights for our code and some of the utilities it uses:
 
Here are links to the copyrights for our code and some of the utilities it uses:
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*[https://github.com/statgen/libStatGen/blob/master/samtools/COPYING Samtools Copyright (MIT License)]
 
*[https://github.com/statgen/libStatGen/blob/master/samtools/COPYING Samtools Copyright (MIT License)]
 
Copies of these can be found in our library under libStatGen/copyrights/.
 
Copies of these can be found in our library under libStatGen/copyrights/.
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= Join in libStatGen mailing list =
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Please join in the [http://groups.google.com/group/libStatGen libStatGen Google Group] to ask / discuss / comment about this library.
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= Troubleshooting =
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If you are having trouble compiling any of the versions, check [[libStatGen Troubleshooting]] for help.  If that does not solve your problem, email me for support.
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= Where to Find It =
 
= Where to Find It =
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= Library Documentation =
 
= Library Documentation =
 
Latest Doxygen documentation:
 
Latest Doxygen documentation:
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[http://www.sph.umich.edu/csg/mktrost/doxygen/current/ Current Library Documentation in Doxygen]
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<!-- <a href="http://csg.sph.umich.edu//abecasis/GOLD/ -->
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<!-- [http://www.sph.umich.edu/csg/mktrost/doxygen/current/ Current Library Documentation in Doxygen] -->
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[http://csg.sph.umich.edu//mktrost/doxygen/current/ Current Library Documentation in Doxygen]
    
Additional documentation:  
 
Additional documentation:  
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* [[libStatGen: GLF]] - Classes specific for reading/writing/analyzing GLF files.
 
* [[libStatGen: GLF]] - Classes specific for reading/writing/analyzing GLF files.
 
* [[libStatGen: FASTQ]] - Classes specific for reading/writing/analyzing FastQ files.
 
* [[libStatGen: FASTQ]] - Classes specific for reading/writing/analyzing FastQ files.
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* [[libStatGen: ASP]] - Classes specific for reading/writing/analyzing ASP files. <span style="color:#D2691E">'''''Coming Soon'''''</span>
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* [[libStatGen: ASP]] - Classes specific for reading/writing/analyzing ASP files.
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* [[libStatGen: VCF]] - Classes specific for reading/writing/analyzing VCF files.
    
= Using the Library =
 
= Using the Library =
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** g++
 
** g++
 
** development version of zlib (zlib1g-dev on ubuntu)
 
** development version of zlib (zlib1g-dev on ubuntu)
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** openssl and md5 (libssl-dev on ubuntu)
   
* Compiles on Linux/Unix
 
* Compiles on Linux/Unix
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= Troubleshooting =
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= How To Use the APIs =
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If you are having trouble compiling any of the versions, check [[libStatGen Troubleshooting]] for help. If that does not solve your problem, email me for support.
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More coming soon, see: http://genome.sph.umich.edu/wiki/Sam_Library_Usage_Examples
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[[LibStatGen: ASP#API for Reading ASP Files| ASP APIs]]
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= How To Use the APIs =
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[[LibStatGen: VCF#API for Reading VCF Files| VCF APIs]]
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More coming soon, see: http://genome.sph.umich.edu/wiki/Sam_Library_Usage_Examples
 
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