3,045
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to searchCigarRoller Proposed Update (view source)
Revision as of 11:00, 4 August 2010
, 11:00, 4 August 2010no edit summary
| <code>void CigarRoller::getExpandedString(std::string &s)</code>
| <code>void CigarRoller::getExpandedString(std::string &s)</code>
| <code>void Cigar::getExpandedString(std::string &s)</code>
| <code>void Cigar::getExpandedString(std::string &s)</code>
|-
|
| <code>uint16_t Cigar::getBufferSize(uint32_t *cigarBuffer, uint16_t cigarBufferLength)</code>
| Length the buffer would need to be.
|-
|
| <code>void Cigar::getBuffer(uint32_t *cigarBuffer)</code>
| Assumes the user properly allocated a buffer of getBufferSize - is there a better what to do this? I think there is, but I'm drawing a blank.
|-
|-
| <code>void CigarRoller::clear()</code>
| <code>void CigarRoller::clear()</code>
Should this be its own class?
Should this be its own class?
== How would this be used by SamRecord ==
When SamRecord needs to convert from SAM to BAM or BAM to SAM or needs alignment length or numOverlaps,e tc, it would use the appropriate Cigar::set.
The conversion logic and parsing logic SAM & BAM would only be located in this Cigar class.
