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, 17:19, 24 April 2012
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| #* The key idea of the method is to capture the excessive heterozygosity in the contaminated sample by modeling the sequence reads as mixture of independent samples. | | #* The key idea of the method is to capture the excessive heterozygosity in the contaminated sample by modeling the sequence reads as mixture of independent samples. |
| # When a sample has array-based genotypes but not yet sequenced | | # When a sample has array-based genotypes but not yet sequenced |
− | #* [[VerifyIDintensity]] software can estimate the levels of DNA sample contamination from aligned sequence reads and population allele frequency | + | #* [[VerifyIDintensity]] software can estimate the levels of DNA sample contamination from pre-computed intensity data using likelihood-based model. |
| #** The key idea is similar to that of [[VerifyBamID]] with sequence data alone | | #** The key idea is similar to that of [[VerifyBamID]] with sequence data alone |
| #** [[VerifyIDintensity]] models array intensity data instead of sequence reads | | #** [[VerifyIDintensity]] models array intensity data instead of sequence reads |