Changes

From Genome Analysis Wiki
Jump to navigationJump to search
no edit summary
Line 1: Line 1:  
Back to parent: [[GotCloud]]
 
Back to parent: [[GotCloud]]
    +
'''We no longer provide a snapshot for GotCLoud'''. This is no longer used.
    
The following are notes taken when creating a Snapshot of a volume where the GotCloud  
 
The following are notes taken when creating a Snapshot of a volume where the GotCloud  
Line 21: Line 22:  
Be sure the zone is the same as the one for the instance you just launched/created.
 
Be sure the zone is the same as the one for the instance you just launched/created.
 
The volume should be based on 'No Snapshot'.
 
The volume should be based on 'No Snapshot'.
Once it is created, attach it to the  instance you have launched and mount it it /gotcloud
+
Once it is created, attach it to the  instance you have launched and '''mount it it /gotcloud'''.
    
'''Install the Software'''
 
'''Install the Software'''
Line 27: Line 28:  
Follow the instructions to install a Debian package  [[Pipeline Debian Package|debian package]]
 
Follow the instructions to install a Debian package  [[Pipeline Debian Package|debian package]]
 
Run the tests to be sure everything is OK.
 
Run the tests to be sure everything is OK.
 +
This installs files in /usr/local/gotcloud and these need to be copied to the snapshot disk.
 +
 +
<code>
 +
  cd /gotcloud
 +
  rm -rf bin scripts test      # Remove old GotCloud
 +
  sudo rsync -av /usr/local/gotcloud/* /gotcloud
 +
  sudo chown -R ubuntu.ubuntu bin scripts test release_version.txt
 +
</code>
 +
 +
Even though the references are not part of the distribution, you cannot do anything useful
 +
without references, so get them and make them available in /gotcloud
 +
 +
<code>
 +
  cd /mnt                    # Because the *.tar.gz will be too big for /home
 +
  sudo wget share.sph.umich.edu:gotcloud/CHANGETHIS.tar.gz
 +
  cd /gotcloud
 +
  sudo tar xzf /mnt/CHANGETHIS.tar.gz
 +
  sudo chown -R ubuntu.ubuntu gotcloud.ref
 +
  sudo chmod 0755 gotcloud.ref
 +
  chmod 0644 gotcloud.ref/*
 +
  ls -la ref
 +
  sudo rm -f /mnt/CHANGETHIS.tar.gz    # if no error
 +
  cd /gotcloud/examples/umakeRef      ############# still true?
 +
  ln -s /gotcloud/ref/hs37d5.fa .      ############# still true?
 +
</code>
    
'''Create the SnapShot'''
 
'''Create the SnapShot'''
Line 36: Line 62:  
<code>
 
<code>
 
   Name:  GotCloud Distribution
 
   Name:  GotCloud Distribution
   Description:  CSG GotCloud files from UMICH
+
   Description:  GotCloud from UMICH   Version 1.03a6
 
   Note snapshot name  e.g. snap-9e782bb8
 
   Note snapshot name  e.g. snap-9e782bb8
 
</code>
 
</code>
    
Now make the name of this snapshot available to the user population.
 
Now make the name of this snapshot available to the user population.
In your Unix terminal, get the snapshots.txt file, update it and make it available:
+
'''In your Unix terminal''', get the snapshots.txt file, update it and make it available:
    
<code>
 
<code>
283

edits

Navigation menu