283
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to searchno edit summary
Back to parent: [[GotCloud]]
Back to parent: [[GotCloud]]
'''We no longer provide a snapshot for GotCLoud'''. This is no longer used.
The following are notes taken when creating a Snapshot of a volume where the GotCloud
The following are notes taken when creating a Snapshot of a volume where the GotCloud
Be sure the zone is the same as the one for the instance you just launched/created.
Be sure the zone is the same as the one for the instance you just launched/created.
The volume should be based on 'No Snapshot'.
The volume should be based on 'No Snapshot'.
Once it is created, attach it to the instance you have launched and mount it it /gotcloud
Once it is created, attach it to the instance you have launched and '''mount it it /gotcloud'''.
'''Install the Software'''
'''Install the Software'''
Follow the instructions to install a Debian package [[Pipeline Debian Package|debian package]]
Follow the instructions to install a Debian package [[Pipeline Debian Package|debian package]]
Run the tests to be sure everything is OK.
Run the tests to be sure everything is OK.
This installs files in /usr/local/gotcloud and these need to be copied to the snapshot disk.
<code>
cd /gotcloud
rm -rf bin scripts test # Remove old GotCloud
sudo rsync -av /usr/local/gotcloud/* /gotcloud
sudo chown -R ubuntu.ubuntu bin scripts test release_version.txt
</code>
Even though the references are not part of the distribution, you cannot do anything useful
Even though the references are not part of the distribution, you cannot do anything useful
<code>
<code>
cd /mnt
cd /mnt # Because the *.tar.gz will be too big for /home
sudo wget share.sph.umich.edu:gotcloud/hs37-db132.tar.gz
sudo wget share.sph.umich.edu:gotcloud/CHANGETHIS.tar.gz
cd /gotcloud
cd /gotcloud
sudo tar xzf /mnt/hs37-db132.tar.gz
sudo tar xzf /mnt/CHANGETHIS.tar.gz
sudo chown -R ubuntu.ubuntu ref
sudo chown -R ubuntu.ubuntu gotcloud.ref
sudo chmod 0755 ref
sudo chmod 0755 gotcloud.ref
chmod 0644 ref/*
chmod 0644 gotcloud.ref/*
ls -la ref
ls -la ref
sudo rm -f /mnt/hs37-db132.tar.gz # if no error
sudo rm -f /mnt/CHANGETHIS.tar.gz # if no error
cd /gotcloud/examples/umakeRef
cd /gotcloud/examples/umakeRef ############# still true?
ln -s /gotcloud/ref/hs37d5.fa .
ln -s /gotcloud/ref/hs37d5.fa . ############# still true?
</code>
</code>
<code>
<code>
Name: GotCloud Distribution
Name: GotCloud Distribution
Description: CSG GotCloud files from UMICH
Description: GotCloud from UMICH Version 1.03a6
Note snapshot name e.g. snap-9e782bb8
Note snapshot name e.g. snap-9e782bb8
</code>
</code>
