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From Genome Analysis Wiki
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echo "#######################################################"
echo "#######################################################"
fi
fi
# Setup 1000g
# Setup 1000g access by s3fs
usermod -aG fuse $USER
usermod -aG fuse $USER
echo 'AKIAIW5TQEUWZ3YCZF2Q:ft1eJa3WGzNE8iitNlbA08x/G8iMqkMIkJjFCIGf' > /etc/$FILES3
echo 'AKIAIW5TQEUWZ3YCZF2Q:ft1eJa3WGzNE8iitNlbA08x/G8iMqkMIkJjFCIGf' > /etc/$FILES3
mkdir -p $THOUSANDG
mkdir -p $THOUSANDG
chown $USER.$USER $THOUSANDG
chown $USER.$USER $THOUSANDG
# It is tempting to use caching with -o use_cache=/tmp 1000genomes
# But s3fs cache is exceedingly dumb and does not use a least recently used
# mechanism -- which will guarantee your root volume will fill up
/usr/local/bin/s3fs -o allow_other 1000genomes $THOUSANDG > $S3ERR 2>&1
/usr/local/bin/s3fs -o allow_other 1000genomes $THOUSANDG > $S3ERR 2>&1
if [ ! -r $THOUSANDG/alignment.index ]; then
if [ ! -r $THOUSANDG/alignment.index ]; then
