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== Install the Software ==
== Install the Software ==
(1) There are a number of additional Debian packages that you may well need, so we make
'''(1)''' There are a number of additional Debian packages that you may well need, so we make
sure they are all installed.
sure they are all installed.
<code>
<code>
sudo apt-get update
sudo apt-get upgrade # Apply maintenance
sudo apt-get install java-common default-jre make libssl0.9.8
sudo apt-get install java-common default-jre make libssl0.9.8
sudo apt-get install libnet-amazon-ec2-perl
sudo apt-get install libnet-amazon-ec2-perl
</code>
</code>
(2) '''S3fs''' allows one to access S3 storage as a conventional file system.
'''(2)''' '''S3fs''' allows one to access S3 storage as a conventional file system.
This can be quite handy, but our recent experience is that accessing S3 data this
This can be quite handy, but our recent experience is that accessing S3 data this
way (at least for 1000 Genomes data) is seldom really usable.
way (at least for 1000 Genomes data) is seldom really usable.
</code>
</code>
(3) Follow the instructions to install a Debian package [[Pipeline Debian Package|debian package]]
'''(3)''' Follow the instructions to install a Debian package [[Pipeline Debian Package|debian package]]
Run the tests to be sure everything is OK.
Run the tests to be sure everything is OK.
