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<code>
<code>
ubuntu@ip-10-254-60-210:~$ sudo more /etc/rc.local
ubuntu@ip-10-254-60-210:~$ sudo more /etc/rc.local
#!/bin/sh
#!/bin/sh
#
#
# rc.local
# rc.local
#
#
# This script is executed at the end of each multiuser runlevel.
# This script is executed at the end of each multiuser runlevel.
# Make sure that the script will "exit 0" on success or any other
# Make sure that the script will "exit 0" on success or any other
# value on error.
# value on error.
#
#
# In order to enable or disable this script just change the execution
# In order to enable or disable this script just change the execution
# bits.
# bits.
#
#
# By default this script does nothing.
# By default this script does nothing.
USER=ubuntu
USER=ubuntu
THOUSANDG=/mnt/1000g
THOUSANDG=/mnt/1000g
FILES3=/etc/passwd-s3fs # Where s3fs access info will live
FILES3=/etc/passwd-s3fs # Where s3fs access info will live
S3ERR=/tmp/s3fs.err
S3ERR=/tmp/s3fs.err
# These are needed for s3fs access
# These are needed for s3fs access
AWSACCESSKEYID=AKIAxxxxxxZ3YCZF2Q
AWSACCESSKEYID=AKIAxxxxxxZ3YCZF2Q
AWSSECRETACCESSKEY=ft1eJa3WxxxxxxxNlbA08x/G8iMqkMIkJjFCIGf
AWSSECRETACCESSKEY=ft1eJa3WxxxxxxxNlbA08x/G8iMqkMIkJjFCIGf
# Check that we have swap set up
# Check that we have swap set up
a=`swapon -s | grep -v File`
a=`swapon -s | grep -v File`
if [ "$a" = "" ]; then
if [ "$a" = "" ]; then
echo "#######################################################"
echo "# You have no SWAP file set up"
echo ""
echo "# swap=/mnt/swapfile"
echo "# sudo dd if=/dev/zero of=$swap bs=1073741824 count=20"
echo "# sudo chown root:root $swap"
echo "# sudo mkswap $swap"
echo "# sudo chmod 0600 $swap"
echo "# sudo swapon $swap"
echo ""
echo "# If need be, add to /etc/fstab"
echo "# echo "$swap none swap sw 0 0" >> /etc/fstab"
echo "#######################################################"
fi
fi
# Set up for GotCloud
# Set up for GotCloud
gc=/gotcloud.mnt
gc=/gotcloud.mnt
if [ ! -r $gc/release_version.txt ]; then
if [ ! -r $gc/release_version.txt ]; then
mkdir -p $gc
mount /dev/xvdg $gc
if [ -d $gc/gotcloud.ref ]; then
echo "#######################################################"
echo "# GotCloud is set up on $gc"
echo "#######################################################"
fi
fi
fi
# Set up access to S3 storage as normal filesystem
# Set up access to S3 storage as normal filesystem
echo "${AWSACCESSKEYID}:$AWSSECRETACCESSKEY" > $FILES3
echo "${AWSACCESSKEYID}:$AWSSECRETACCESSKEY" > $FILES3
chown root.root $FILES3
chown root.root $FILES3
chmod 640 $FILES3
chmod 640 $FILES3
usermod -aG fuse $USER
usermod -aG fuse $USER
# Setup 1000genomes
# Setup 1000genomes
mkdir -p $THOUSANDG
mkdir -p $THOUSANDG
if [ ! -r $THOUSANDG/release ]; then
if [ ! -r $THOUSANDG/release ]; then
chown $USER.$USER $THOUSANDG
/usr/local/bin/s3fs -o allow_other 1000genomes $THOUSANDG > $S3ERR 2>&1
if [ ! -r $THOUSANDG/alignment.index ]; then
echo "#######################################################"
echo "# 1000genomes is not set up on $THOUSANDG"
echo "# See S3FS errors in $S3ERR"
echo "#######################################################"
fi
df -h
fi
fi
exit 0
exit 0
</code>
</code>
