From Genome Analysis Wiki
Jump to navigationJump to search
1 byte added
, 18:48, 7 June 2016
Line 48: |
Line 48: |
| *<code>"--format"</code> decides whether to import imputed values from dosage (<code>DS</code>) or genotype probabilities (<code>GP</code>) of the input VCF file (available handles: <code>DS</code> (default) and <code>GP</code>). | | *<code>"--format"</code> decides whether to import imputed values from dosage (<code>DS</code>) or genotype probabilities (<code>GP</code>) of the input VCF file (available handles: <code>DS</code> (default) and <code>GP</code>). |
| *<code>"--buffer"</code> denotes the number of markers to import at a time (valid only for MaCH format) (default value <code>10000</code>). | | *<code>"--buffer"</code> denotes the number of markers to import at a time (valid only for MaCH format) (default value <code>10000</code>). |
− | *<code>"--idDelimiter "</code> denotes the delimiter to Split VCF Sample ID into FID and IID for PLINK format (default value <code>_</code>. | + | *<code>"--idDelimiter "</code> denotes the delimiter to Split VCF Sample ID into FID and IID for PLINK format (default value <code>_</code>). |
| | | |
| Usage: ./DosageConvertor --vcfDose TestDataImputedVCF.dose.vcf.gz | | Usage: ./DosageConvertor --vcfDose TestDataImputedVCF.dose.vcf.gz |