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, 19:10, 11 July 2017
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| *<code>--tag</code> indicates whether to import imputed values from dosages (<code>DS</code>: default), genotype probabilities (<code>GP</code>), or hard genotype calls (<code>GT</code>) from the input VCF file | | *<code>--tag</code> indicates whether to import imputed values from dosages (<code>DS</code>: default), genotype probabilities (<code>GP</code>), or hard genotype calls (<code>GT</code>) from the input VCF file |
| *<code>--format</code> sets the format of the converted output file. | | *<code>--format</code> sets the format of the converted output file. |
− | **If <code>--type mach</code> is used, <code>--format</code> can take values 1, 2, or 3. Each of these values correspond to the three different formats available for PLINK dosage files (details given [http://www.cog-genomics.org/plink/1.9/assoc#dosage here]) | + | **If <code>--type plink</code> is used, <code>--format</code> can take values 1, 2, or 3. Each of these values correspond to the three different formats available for PLINK dosage files (details given [http://www.cog-genomics.org/plink/1.9/assoc#dosage here]) |
| **If <code>--type mach</code> is used, <code>--format</code> can take values 1 or 2. Details are given in [[#Convert to MaCH Files| Convert to MaCH Files]] | | **If <code>--type mach</code> is used, <code>--format</code> can take values 1 or 2. Details are given in [[#Convert to MaCH Files| Convert to MaCH Files]] |
| *<code>--buffer</code> sets the number of markers to import at a time (MaCH format only) (default value <code>10000</code>) | | *<code>--buffer</code> sets the number of markers to import at a time (MaCH format only) (default value <code>10000</code>) |