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, 01:13, 12 July 2017
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| | <code>--tag</code> | | | <code>--tag</code> |
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− | indicates the FORMAT tag of the VCF from which to import the imputed dosages: | + | indicates the FORMAT tag of the VCF file from which to import the imputed dosages: |
| *<code>DS</code>: imputed values from dosages (default) | | *<code>DS</code>: imputed values from dosages (default) |
| *<code>GP</code>: genotype probabilities | | *<code>GP</code>: genotype probabilities |
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| *the second columns contains either M (for males) or F (for females) | | *the second columns contains either M (for males) or F (for females) |
| |- | | |- |
− | | <code>--TrimAlleles</code> | + | | <code>--trimNames</code> |
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| indicates whether to trim alleles and variants IDs to 100 characters | | indicates whether to trim alleles and variants IDs to 100 characters |
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| Since PLINK does not allow variant IDs longer than 16,000 characters, this option can be used if variant names are too long. | | Since PLINK does not allow variant IDs longer than 16,000 characters, this option can be used if variant names are too long. |
| + | |- |
| + | | <code>--trimLength</code> |
| + | | |
| |} | | |} |
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