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The command options for DosageConvertor are explained below.
The command options for DosageConvertor are explained below.
*<code>"--vcfDose"</code> is a mandatory parameter requiring the input VCF file.
*<code>"--vcfDose"</code> is a mandatory parameter requiring the input VCF dosage file from minimac3/4.
*<code>"--info"</code> denotes the info file from the same imputation output. This parameter is NOT mandatory, but if NO info file is provided, the output MaCH info file will have some missing columns.
*<code>"--info"</code> denotes the info file from the same imputation output. This parameter is NOT mandatory, but if NO info file is provided, the output MaCH info file will have some missing columns.
*<code>"--prefix"</code> denotes the output file prefix (default value: <code>Converted.Dosage</code>).
*<code>"--prefix"</code> denotes the output file prefix (default value: <code>Converted.Dosage</code>).
