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, 18:50, 11 July 2017
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| The command options for DosageConvertor are explained below. | | The command options for DosageConvertor are explained below. |
− | *<code>--vcfDose</code> is a mandatory parameter requiring the input VCF dosage file from minimac3/4. | + | *<code>--vcfDose</code> is a mandatory parameter indicating the minimac3/4 VCF dosage file to be converted |
− | *<code>--info</code> denotes the info file from the same imputation output. This parameter is optional, but if NO info file is provided, the output MaCH info file will have some missing columns. | + | *<code>--info</code> is the info file generated by minimac3/4 at the same time as the VCF dosage file. This parameter is optional, but if NO info file is provided, the output MaCH info file will have some missing columns. |
| *<code>--prefix</code> denotes the output file prefix (default value: <code>Converted.Dosage</code>). | | *<code>--prefix</code> denotes the output file prefix (default value: <code>Converted.Dosage</code>). |
| *<code>--type</code> denotes the output file format (available handles: <code>plink</code> (default) and <code>mach</code>). | | *<code>--type</code> denotes the output file format (available handles: <code>plink</code> (default) and <code>mach</code>). |