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DosageConvertor (view source)

Revision as of 01:47, 12 July 2017

66 bytes added ,  01:47, 12 July 2017
→‎Convert to MaCH Files
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== Convert to MaCH Files ==
 
== Convert to MaCH Files ==
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The following command will convert an input VCF dosage file to a MaCH/minimac dosage file (the format for previous versions of [[Minimac | minimac]]). The generated dosage files can be tested for association using [http://genome.sph.umich.edu/wiki/Mach2dat:_Association_with_MACH_output mach2dat].  
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The following command will convert an input VCF dosage file to a MaCH/minimac dosage file (the format for previous versions of [[Minimac | minimac]]). The generated dosage files can be tested for association using tools like [http://genome.sph.umich.edu/wiki/Mach2dat:_Association_with_MACH_output mach2dat] or [http://www.genabel.org/packages/ProbABEL ProbABEL].  
    
  ./DosageConvertor        --vcfDose      TestDataImputedVCF.dose.vcf.gz
 
  ./DosageConvertor        --vcfDose      TestDataImputedVCF.dose.vcf.gz
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Retrieved from "http://genome.sph.umich.edu/wiki/Special:MobileDiff/14796"

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