1,120
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to search→Frequently asked Questions
A. We believe that BN matrix is more robust to construct the empirical kinship matrix. Also we recommend to use call rate 95% threshold and MAF threshold of 0.01 when preparing the data.
A. We believe that BN matrix is more robust to construct the empirical kinship matrix. Also we recommend to use call rate 95% threshold and MAF threshold of 0.01 when preparing the data.
=== NaN in the kinship file ==
Q. I am observing a series of -nan in the kinship matrix. What is the problem?
A. Most likely, monomorphic SNPs would create such a problem. Typically, MAF threshold such as 1% is used.
=== Citing EMMAX ===
=== Citing EMMAX ===
