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<pre>perl epacts.pl single -man
<pre>perl epacts.pl single -man
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== 5. Report association results in appropriate format<br> ==
== 5. Report association results in appropriate format<br> ==
Once the EPACTS pipeline has completed, you will find all of the results in the ''.epacts ''file. Here is an example:
Once the EPACTS pipeline has completed, you will find all of the results in the ''.epacts ''file. Here is an example:
<pre>#CHROM BEGIN END MARKER_ID NS AC CALLRATE MAF PVALUE SCORE
<pre>#CHROM BEGIN END MARKER_ID NS AC CALLRATE MAF PVALUE SCORE
20 68303 68303 20:68303_A/G_Upstream:DEFB125 266 1 1 0.0018797 NA NA
20 68303 68303 20:68303_A/G_Upstream:DEFB125 266 1 1 0.0018797 NA NA
20 76726 76726 20:76726_C/G_Nonsynonymous:DEFB125 266 0 1 0 NA NA
20 76726 76726 20:76726_C/G_Nonsynonymous:DEFB125 266 0 1 0 NA NA
20 76771 76771 20:76771_C/T_Nonsynonymous:DEFB125 266 3 1 0.0056391 0.68484 0.40587
20 76771 76771 20:76771_C/T_Nonsynonymous:DEFB125 266 3 1 0.0056391 0.68484 0.40587
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You will need to parse the information into the format as required here [NEED FINAL DRAFT OF ASSOCIATION ANALYSIS FILE AND COLUMN SPECIFICATIONS].
You will need to parse the information into the format as required here [NEED FINAL DRAFT OF ASSOCIATION ANALYSIS FILE AND COLUMN SPECIFICATIONS].
