Changes

${EPACTS_DIRECTORY}/example/1000G_dummy_pheno.ped

${EPACTS_DIRECTORY}/example/1000G_dummy_pheno.ped

</pre>  

</pre>  

 

<br> Run the single variant score test on the example data using this command:  

 

<pre>${EPACTS_DIR}/epacts single  

Run the single variant score test on the example data using this command:  

--vcf {EPACTS_DIR}/example/1000G_exome_chr20_example_softFiltered.calls.vcf.gz  

<pre>${EPACTS_DIR}/epacts single \

--ped {EPACTS_DIR}/example/1000G_dummy_pheno.ped  

--vcf {EPACTS_DIR}/example/1000G_exome_chr20_example_softFiltered.calls.vcf.gz \

--min-maf 0.001 --chr 20 --pheno DISEASE --cov AGE --cov SEX --test b.score --anno  

--ped {EPACTS_DIR}/example/1000G_dummy_pheno.ped \

--min-maf 0.001 --chr 20 --pheno DISEASE --cov AGE --cov SEX --test b.score --anno \

--out {OUTPUT_DIR}/test --run 2 &amp;

--out {OUTPUT_DIR}/test --run 2 &amp;

</pre>  

</pre>