Changes

To run the Firth test as well, use:  

To run the Firth test as well, use:  

<pre>epacts2/epacts single -vcf [INPUT VCF FILENAME] -ped [INPUT PED FILENAME] -out [OUTPUT FILENAME PREFIX] -test b.firth -pheno DISEASE -cov AGE -sepchr -anno -run 10

<pre>epacts2/epacts single -vcf [INPUT VCF FILENAME] -ped [INPUT PED FILENAME] -out [OUTPUT FILENAME PREFIX] \

-test b.firth -pheno DISEASE -cov AGE -sepchr -anno -run 10

</pre>  

</pre>  

Note that the Firth bias-corrected test is more computationally intensive than the score test.  

Note that the Firth bias-corrected test is more computationally intensive than the score test.