From Genome Analysis Wiki
Jump to navigationJump to search
605 bytes added
, 13:33, 27 September 2012
Line 16: |
Line 16: |
| | | |
| EPACTS is available for download [http://www.sph.umich.edu/csg/kang/epacts/download/index.html here]. | | EPACTS is available for download [http://www.sph.umich.edu/csg/kang/epacts/download/index.html here]. |
| + | |
| + | For external users, follow the instruction at [[EPACTS]] page, summarized below. |
| + | * Download EPACTS binary at http://www.sph.umich.edu/csg/kang/epacts/download/epacts_v2.1.noref_binary.2012_07_03.tar.gz (94MB) |
| + | * Uncompress EPACTS package to the directory you would like to install |
| + | tar xzvf epacts_v2.1.noref_binary.2012_07_03.tar.gz |
| + | * Download the reference FASTA files by running the following commands |
| + | cd epacts2.1/ |
| + | ./ref_download.sh (Or copy the FASTA and index file locally you have to ${EPACTS_DIR}/ext/ref/) |
| + | * Perform a test run by running the following command |
| + | example/test_run_epacts.sh |
| | | |
| For users in CSG, EPACTS can be found here: | | For users in CSG, EPACTS can be found here: |