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For example, for imputed chromosome 1 data from FUSION:
For example, for imputed chromosome 1 data from FUSION:
<pre>> dose2vcf/dose2vcf --dose FUSION.GWAS.1KG.imp.chr1.dose --info FUSION.GWAS.1KG.imp.chr1.info --out out/FUSION.GWAS.1KG.imp.chr1</pre>
<pre>> dose2vcf/dose2vcf --dose FUSION.GWAS.1KG.imp.chr1.dose --info FUSION.GWAS.1KG.imp.chr1.info --out out/FUSION.GWAS.1KG.imp.chr1</pre>
The expected output file is:
The expected output file is:
<pre>> out/FUSION.GWAS.1KG.imp.chr1.vcf</pre>
<pre>out/FUSION.GWAS.1KG.imp.chr1.vcf</pre>
== 3. Prepare PED file for phenotypes and covariates ==
== 3. Prepare PED file for phenotypes and covariates ==
