Changes

== 5. &nbsp;Report EPACTS results<br>  ==

== 5. &nbsp;Report EPACTS results<br>  ==

For analysis B and C, please upload the two .epacts.gz files to the FTP server:

For analyses B and C, please upload the two .epacts.gz files to the FTP server:  

#'''Score test:''' &nbsp;DIAGRAMv4_QQQ_XXX_1000G_KKK_SCR_YYY_ZZZ.epacts.gz

#'''Score test:''' &nbsp;DIAGRAMv4_QQQ_XXX_1000G_KKK_SCR_YYY_ZZZ.epacts.gz  

#'''Firth test: '''&nbsp;DIAGRAMv4_QQQ_XXX_1000G_KKK_FIR_YYY_ZZZ.epacts.gz

#'''Firth test: '''&nbsp;DIAGRAMv4_QQQ_XXX_1000G_KKK_FIR_YYY_ZZZ.epacts.gz

Here's an example score test .epacts file

Here's an example score test .epacts file  

<pre>$ head test.epacts

<pre>$ head test.epacts

#CHROM  BEGIN  END    MARKER_ID      NS      AC      CALLRATE        MAF    PVALUE  SCORE  N.CASE  N.CTRL  AF.CASE AF.CTRL

#CHROM  BEGIN  END    MARKER_ID      NS      AC      CALLRATE        MAF    PVALUE  SCORE  N.CASE  N.CTRL  AF.CASE AF.CTRL