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, 17:15, 4 October 2012
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| </pre> | | </pre> |
| + | |
| + | Each column represents |
| + | * CHROM : Chromosome Name |
| + | * BEGIN, END : Base position of the variant on each side |
| + | * MARKER_ID : [CHROM]:[POS]_[REF]/[ALT]_[ANNOTATION] formatted marker ID. [ANNOTATION] information will be available only with --anno option |
| + | * NS : Number of samples with non-missing genotypes |
| + | * AC : Non-reference allele count |
| + | * CALLRATE : Genotype call rate |
| + | * MAF : Minor allele frequency |
| + | * PVALUE : P-value |
| + | |
| + | The rest of columns varies by statistical tests. For example, in b.score test, SCORE represents score test statistics, N.CASE and N.CTRL represents the case/control counts, and AF.CASE and AF.CTRL represents the case/control allele frequencies. |