Changes

=== Analyses for QC  ===

=== Analyses for QC  ===

For quality control, please run an additional analysis using EPACTS on all SNPs for chromosome 20 only using the '''SCORE''' test without BMI adjustment.  These results will be used to compare with results from the primary analyses, to ensure the new EPACTS software has been run correctly.

For quality control, please run an additional analysis using EPACTS on all SNPs for chromosome 20 only using the '''SCORE''' test without BMI adjustment.  These results will be used to compare with results from the primary analyses, to ensure the new EPACTS software has been run correctly.  

 

 

{| width="1650" border="1" cellpadding="1" cellspacing="1" align="center"

{| width="1650" border="1" cellpadding="1" cellspacing="1" align="center"

| align="center" | '''Output Filename Format'''

| align="center" | '''Output Filename Format'''

|-

|-

| 3.  Analysis of chromosome 20 using logistic regression score test  

| [http://genome.sph.umich.edu/wiki/EPACTS_for_DIAGRAM#3._Analysis_of_chromosome_20_using_logistic_regression_score_test 3.  Analysis of chromosome 20 using logistic regression score test]

| Score test  

| Score test  

|  

|  

*FBC = Firth Bias Corrected Logistic Regression

*FBC = Firth Bias Corrected Logistic Regression

'''YYY '''indicates the DATE of file generation (MMDDYY format, e.g. 021710 – apologies in advance to our&nbsp;European colleagues)<br>'''ZZZ '''indicates the name + other initials of the uploader (e.g., BFV, LJS, ABC, etc.)  

'''YYY '''indicates the DATE of file generation (MMDDYY format, e.g. 021710 – apologies in advance to our&nbsp;European colleagues)<br>'''ZZZ '''indicates the name + other initials of the uploader (e.g., BFV, LJS, ABC, etc.)

=== 1. Typical DIAGRAM analysis using existing association pipeline<br>  ===

=== 1. Typical DIAGRAM analysis using existing association pipeline<br>  ===