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Jump to navigationJump to search→3. Prepare PED file for phenotypes and covariates
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'''Note'''''':''' Categorical covariates must be coded as dummy variables! For example, Sex cannot be coded as "M" or "F".
An example PED file with a header is as follows. Note that the header must start with a "#" symbol.
An example PED file with a header is as follows. Note that the header must start with a "#" symbol.
M QT
M QT
M AGE
M AGE
</pre>
</pre>
== 4. Run EPACTS association pipeline ==
== 4. Run EPACTS association pipeline ==
