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=== Rscript execution error: No such file or directory ===
=== Rscript execution error: No such file or directory ===
<pre>epacts2.1/epacts single \
epacts2.1/epacts single \
--vcf epacts2.1/example/1000G_exome_chr20_example_softFiltered.calls.vcf.gz \
--ped epacts2.1/example/1000G_dummy_pheno.ped \
--min-maf 0.001 --chr 20 --pheno DISEASE --cov AGE --cov SEX --test b.score --anno \
--out out/test --run 1 &
[4] 13569
--vcf epacts2.1/example/1000G_exome_chr20_example_softFiltered.calls.vcf.gz \<br>--ped epacts2.1/example/1000G_dummy_pheno.ped \<br>--min-maf 0.001 --chr 20 --pheno DISEASE --cov AGE --cov SEX --test b.score --anno \<br>--out out/test --run 1 &<br>[4] 13569<br>
$ Detected phenotypes with 2 unique values - 1 and 2 - considering them as binary phenotypes... re-encoding them into 1 and 2
Successfully written phenotypes and 2 covariates across 266 individuals
Processing chromosome 20...
Finished generating EPACTS Makefile
Running 1 parallel jobs of EPACTS
epacts2.1/bin/..//bin/make -f out/test.Makefile -j 1
'''Rscript execution error: No such file or directory'''
The issue seems to be the absence with Rscript, which is usually installed with R.
</pre>The issue seems to be the absence with Rscript, which is usually installed with R.
If you can find Rscript (e.g. /usr/bin/Rscript, /usr/local/bin/Rscript), or if you can re-install the full Rscript, you can simply avoid the problem by setting your environment variable.
If you can find Rscript (e.g. /usr/bin/Rscript, /usr/local/bin/Rscript), or if you can re-install the full Rscript, you can simply avoid the problem by setting your environment variable.
