Changes

If you can find Rscript (e.g. /usr/bin/Rscript, /usr/local/bin/Rscript), or if you can re-install the full Rscript, you can simply avoid the problem by setting your environment variable.  

If you can find Rscript (e.g. /usr/bin/Rscript, /usr/local/bin/Rscript), or if you can re-install the full Rscript, you can simply avoid the problem by setting your environment variable.  

Otherwise, Hyun will modify EPACTS to not requiring this (I can run R CMD BATCH instead of Rscript).

Otherwise, Hyun will modify EPACTS to not requiring this (so you can run R CMD BATCH instead of Rscript).

=== ERROR: No overlapping IDs between VCF and PED file. Cannot proceed.  ===

=== ERROR: No overlapping IDs between VCF and PED file. Cannot proceed.  ===