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=== A. Convert dosage file into VCF format ===
=== A. Convert dosage file into VCF format ===
Use the wrapper program "dose2vcf" to convert your doseage output to VCF format. Download the tool from [http://www.sph.umich.edu/csg/cfuchsb/dose2vcf_v0.4.tgz here]. If you used rs numbers during imputation, you can find mapping tables here
Use the wrapper program "dose2vcf" to convert your doseage output to VCF format. Download the tool from [http://www.sph.umich.edu/csg/cfuchsb/dose2vcf_v0.4.tgz here]. If you used rs numbers during imputation, you can find mapping tables [ http://www.sph.umich.edu/csg/cfuchsb/mapping_rs_ALL.GIANT.phase1_release_v3.20101123.tgz here ]
