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=== A. Convert dosage file into VCF format ===
=== A. Convert dosage file into VCF format ===
Use the wrapper program "dose2vcf" to convert your doseage output to VCF format. Download the tool from here. If you used rs numbers during imputation, you can find mapping tables here
Use the wrapper program "dose2vcf" to convert your doseage output to VCF format. Download the tool from [http://www.sph.umich.edu/csg/cfuchsb/dose2vcf_v0.4.tgz here]. If you used rs numbers during imputation, you can find mapping tables here
To run the wrapper program, use the following command
To run the wrapper program, use the following command
