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The following equation gives the estimate of F where the observed genotypes are available. <math>g_{i,j,k}</math> is the genotype composed of alleles <math>i</math> and <math>j</math> for the <math>k</math>th individual. <math>P(G_{i,j}|\textbf{p})</math> is the estimated genotype allele frequency for genotype <math>G_{i,j}</math> under HWE assumption.  <math>I[i \ne j]</math> is an identity function for heterozygote genotypes.  

The following equation gives the estimate of F where the observed genotypes are available. <math>g_{i,j,k}</math> is the genotype composed of alleles <math>i</math> and <math>j</math> for the <math>k</math>th individual.[[ AF|<math>P(G_{i,j}|\textbf{p})</math>]] is the [[AF|estimated genotype allele frequency]] for genotype <math>G_{i,j}</math> under HWE assumption.  <math>I[i \ne j]</math> is an identity function for heterozygote genotypes.  

          

          

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