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− | fte is a coalescent simulation program developed by Mark Reppell, Michael Boehnke, and Sebastian Zöllner capable of modeling samples drawn from a population which has undergone faster than exponential growth.
| + | FTEC is a coalescent simulation program developed by Mark Reppell, Michael Boehnke, and Sebastian Zöllner capable of modeling samples drawn from a population which has undergone faster than exponential growth. |
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− | ==Installation and Compilation==
| + | =Installation and Compilation= |
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− | 1) Download the the .tar file linked below
| + | ==Unix== |
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| + | 1) Download the appropriate file below <br> |
| + | 2) Place downloaded file in the directory where you would like the program to reside <br> |
| + | 3) Unzip the file with the command 'gunzip Filename.tar.gz' and then unzar the file with the command 'tar -xf Filename.tar' <br> |
| + | 4) Inside the new directory /FTEC which has been created enter the command 'make' <br> |
| + | 5) An executable file named 'FTEC' should now reside in this directory, this is the simulator and can be run using './FTEC -parameters' |
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− | ===In Unix Environment=== | + | ==Windows with MinGW== |
| + | 1) Instructions for Installing MinGW and MSYS can be found here: [[Installing MinGW & MSYS on Windows]] <br> |
| + | 2) Download the appropriate file from below and place it in the folder /msys/1.0/home/user/ where "user" is your user account name <br> |
| + | 3) Open the MSYS command line window <br> |
| + | 4) Unzip the file using the command "gunzip File_Name.tar.gz" and then untar the file with the command "tar xf Filename.tar" <br> |
| + | 5) Enter the newly created folder /FTEC and enter the command "make" <br> |
| + | 6) An executable file named 'FTEC' should now reside in this directory, this is the simulator and can be run using './FTEC -parameters' |
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− | 2) Place downloaded file in the directory where you would like the program to reside and untar the file <br>
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− | 3) A new directory named 'fte' will appear in your current directory, inside this m
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− | == Download ==
| + | For information on how to use the simulator see the user's guide below. |
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− | fte requires header files from both the Boost and TCLAP libraries to compile and run. There are 3 available downloads below, differing in which of these library files they contain. File size and download time increase with the inclusion of each set of library files, so a user can select the most appropriate download for their system. If a user's system already includes a library and they download a version of fte including that library's header files the program will compile without problems, so if a user is unsure whether they have a library or not download the larger source file below.
| + | = Download = |
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− | [[Media:Fte_v1.36.tar| Program files with both Boost and TCLAP header files (52 Mb) ]] <br> | + | FTEC requires header files from both the Boost and TCLAP libraries to compile and run. There are 3 available downloads below, differing in which of these library files they contain, so that a user can select the most appropriate download for their system. If a user's system already includes a library and they download a version of ftec that includes the library's header files the program will compile without problem, so if there is any uncertainty download the larger source file below. |
− | [[Media:Fte_v1.36_noboost.tar | Program files with TCLAP header files (270 Kb)]] <br> | + | |
− | [[Media:Fte_v1.36_src_only.tar | Program files without Boost or TCLAP header files (80 Kb)]] <br> | + | [[Media:FTEC_withboost.tar.gz| Program files with both Boost and TCLAP header files (300 Kb) ]] <br> |
| + | [[Media:FTEC_noboost.tar.gz | Program files with TCLAP header files (58 Kb)]] <br> |
| + | [[Media:FTEC_src_only.tar.gz | Program files without Boost or TCLAP header files (27 Kb)]] <br> |
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| + | More information on [http://www.boost.org/ Boost] and the [http://www.boost.org/doc/libs/1_48_0/doc/html/boost_random.html Boost Random Number Library]<br> |
| + | More information on the [http://tclap.sourceforge.net/ TCLAP Library] |
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| == Documentation == | | == Documentation == |
| + | |
| + | [[Media:Fte_Document_06012012.pdf | User's guide]] |