FamRvTest command
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Useful Pages
Overview of Options
Options:
Kinship Options : --kinGeno, --kinPedigree, --kinFile [], --kinSave,
--kinMaf [0.05], --kinMiss [0.05]
Input/Output Options : --ped [], --dat [], --vcf [], --noeof,
--groupFile [], --longOutput [ON], --prefix []
VC Options : --inverseNormal, --useCovariates, --traitName []
Single Variant Tests : --SingleVarScore
Burden Tests : --burden, --MB, --VT, --SKAT_BETA, --SKAT_UW,
--SKAT_MB
Other Options : --freqFile [], --annotation [], --maf [0.05],
--miss [0.05], --simulate, --dosage, --founderFreq
PhoneHome : --noPhoneHome, --phoneHomeThinning [100]
Kinship Options
--kinGeno: kinship matrix is estimated from genotype --kinPedigree: kinship matrix is estimated from pedigree structure --kinFile: kinship matrix is read from a file --kinMaf: the maf cutoff for markers used to estimate kinship --kinMiss: the genotype call rate cutoff for markers included to estimate kinship
Input/Output Options
--ped
