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363 bytes added
, 15:34, 2 April 2010
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| '''Optional Parameters:''' | | '''Optional Parameters:''' |
| --minReadLen : Minimum allowed read length (Defaults to 10). | | --minReadLen : Minimum allowed read length (Defaults to 10). |
| + | --quitAfterErrorNum : Number of errors to allow before quitting |
| + | reading/validating the file. |
| + | -1 (default) indicates to not quit until |
| + | the entire file is read. |
| + | 0 indicates not to read/validate anything |
| --maxReportedErrors : Maximum number of errors to display before | | --maxReportedErrors : Maximum number of errors to display before |
| suppressing them (Defaults to 20). | | suppressing them (Defaults to 20). |
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| | | |
| '''Usage:''' | | '''Usage:''' |
− | ./fastQValidator --file <fileName> [--minReadLen <minReadLen>] [--maxReportedErrors <maxReprotedErrors>|--ignoreAllErrors] [--baseSpace|--colorSpace|--autoDetect] [--printBaseComp] [--disableAllMessages] | + | ./fastQValidator --file <fileName> [--minReadLen <minReadLen>] [--quitAfterErrorNum] [--maxReportedErrors <maxReprotedErrors>|--ignoreAllErrors] [--baseSpace|--colorSpace|--autoDetect] [--printBaseComp] [--disableAllMessages] |
| | | |
| '''Examples:''' | | '''Examples:''' |
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| | | |
| Input Parameters | | Input Parameters |
− | --file [testFile.txt], --printBaseComp [ON], --disableAllMessages, --minReadLen [10] | + | --file [testFile.txt], --printBaseComp [ON], --disableAllMessages, --minReadLen [10], |
| + | --quitAfterErrorNum [-1] |
| Space Type : --baseSpace [ON], --colorSpace, --autoDetect | | Space Type : --baseSpace [ON], --colorSpace, --autoDetect |
| Errors : --ignoreAllErrors, --maxReportedErrors [100] | | Errors : --ignoreAllErrors, --maxReportedErrors [100] |