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, 10:58, 25 March 2010
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| '''Optional Parameters:''' | | '''Optional Parameters:''' |
− | --minReadLen : Minimum allowed read length (Defaults to 10). | + | --minReadLen : Minimum allowed read length (Defaults to 10). |
− | --maxReportedErrors : Maximum number of errors to display before suppressing them (Defaults to 20). | + | --maxReportedErrors : Maximum number of errors to display before |
− | --ignoreAllErrors : Ignore all errors (same as --maxReportedErrors 0), overwrites the maxReportedErrors option. | + | suppressing them (Defaults to 20). |
− | --printBaseComp : turns on the printing of Base Composition Statistics.
| + | --ignoreAllErrors : Ignore all errors (same as maxReportedErrors = 0) |
− | --disableAllMessages : turns off all prints, including errors, and summary
| + | overwrites the maxReportedErrors option. |
− | statistics (Defaults to enabled). Does not turn off
| + | --printBaseComp : turns on the printing of Base Composition Statistics. |
− | Base Composition printing if printBaseComp is set.
| + | --disableAllMessages : turns off all prints, including errors, and summary |
| + | statistics (Defaults to enabled). Does not turn off |
| + | Base Composition printing if printBaseComp is set. |
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| '''Optional Space Options for Raw Sequence (Last one specified is used):''' | | '''Optional Space Options for Raw Sequence (Last one specified is used):''' |