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Revision as of 14:01, 7 September 2011
, 14:01, 7 September 2011Update path to fastqvalidator
== FastQ Sequence Validation Criteria ==
== FastQ Sequence Validation Criteria ==
The following validation criteria is used by [[C++ Class: FastQFile|FastQFile class]] and the [[C++ Executable: fastQValidator|the FastQ Validator Program]] when reading a FastQ Sequence
The following validation criteria is used by [[C++ Class: FastQFile|FastQFile class]] and the [[fastQValidator|the FastQ Validator Program]] when reading a FastQ Sequence
| All characters in the base sequence must be in the allowable set specified via configuration.
| All characters in the base sequence must be in the allowable set specified via configuration.
* Base Only: A C T G N a c t g n
* Base Only: A C T G N a c t g n
* Color Space Only: 0 1 2 3 .(period)
* Color Space Only: 0 1 2 3 .(period) Color Space files must start with a 1 character primer base.
| ERROR on Line <current line #>: Invalid character ('<invalid char>') in base sequence.
| ERROR on Line <current line #>: Invalid character ('<invalid char>') in base sequence.
|-
|-
