3,045
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to searchno edit summary
* CHRS - this specifies which chromosomes to process
* CHRS - this specifies which chromosomes to process
** Leave this out of your configuration file if you want to process all chromosomes (1-22, X, Y)
** Leave this out of your configuration file if you want to process all chromosomes (1-22, X, Y)
* [[BAM_INDEX]] - file containing the samples & BAMs to be processed
* [[#GBR60bam.index|BAM_INDEX]] - file containing the samples & BAMs to be processed
* Reference Information:
* Reference Information:
** AS - assembly value to put in the BAM
** AS - assembly value to put in the BAM
