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Revision as of 15:54, 3 August 2015
, 15:54, 3 August 2015→Derivation
\end{align}
\end{align}
</math>
</math>
where <math>n</math> is the number of alleles. <math>\frac{n(n+1)}{2}</math> is the number of genotypes possible for <math>n</math> alleles. So we are simply starting with equal frequency estimate guesses for each genotype.
The E step equates the expectation of the genotype <math>G_{i,j}</math> for individual k as:
The E step equates the expectation of the genotype <math>G_{i,j}</math> for individual k as:
Adrian with much help from Hyun.
Adrian with much help from Hyun.
=== Implementation ===
This is implemented in [http://genome.sph.umich.edu/wiki/Vt#Estimate vt].
=== Maintained by ===
=== Maintained by ===
This page is maintained by [mailto:atks@umich.edu Adrian].
This page is maintained by [mailto:atks@umich.edu Adrian].
