1,555
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to search→Command Line Options
--minDepth ''threshold'' Positions where the read depth falls below this threshold will be excluded.
--minDepth ''threshold'' Positions where the read depth falls below this threshold will be excluded.
--maxDepth ''threshold'' Positions where the read depth exceeds this threshold will be excluded.
--maxDepth ''threshold'' Positions where the read depth exceeds this threshold will be excluded.
--hardFilter Filtered positions will be completely absent from output. The default is to use a soft filter, where these
positions are included in output but annotated as failing specific filters.
=== VCF Output ===
=== VCF Output ===
